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Phylogenetic Tree

Software

MEGA

free

3,102

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, and Kumar S

MEGA is an integrated tool for conducting automatic and manual sequence alignment, inferring phylogenetic...

manual sequence alignment, inferring phylogenetic trees, mining web-based

Geneious

2,057

Biomatters Ltd.

Geneious is a research tool designed for biologists and not computer...

calling. Streamlined microsatellite genotyping. Tree building and viewing

TreeView

free

1,934

Roderic D. M. Page

TreeView is a program to view phylogenetic trees in your computer. It can read and display...

a program to view phylogenetic trees in your computer. A phylogenetic tree is a graphical

Jalview

free

1,619

The Barton Group

Jalview is a free program for multiple sequence alignment editing...

alignments, analyze them with phylogenetic trees and principal components

TreeView X

free

1,542

Roderic D. M. Page

TreeView X is an open source program to display phylogenetic trees on Linux, Unix, Mac OS X, and Windows platforms...

program to display phylogenetic trees on Linux, Unix...by PAUP*, ClustalX, TREE-PUZZLE

CodonCode Aligner

1,374

CodonCode Corporation

CodonCode Aligner is a software program that targets genetics research, a domain with high complexity...

and deletions or generate phylogenetic trees and restriction maps

Unipro UGENE

free

1,229

Unipro, Russia

UGENE is a free cross-platform genome analysis suite. It works perfectly on Windows, Mac OS or Linux and requires...

and PSIPRED; -Phylogenetic analysis with Phylip...mode support; -Phylogenetic tree viewer; -Dot

Dendroscope

free

298

Daniel H. Huson

Dendroscope is a platform-independent app written in Java...

enables conveniently to browse phylogenetic trees and networks with up

mrbayes32

free

179

The Swedish Museum of Natural History

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic...

wide range of phylogenetic...majority rule consensus trees in FigTree

SplitsTree4

free

126

Center for Bioinformatics Tübingen

Given an alignment of sequences, a distance matrix or a set of trees, the program will compute...

computing unrooted phylogenetic networks...of trees, the program will compute a phylogenetic tree

TOPALi

free

Biomathematics & Statistics Scotland

TOPALi provides an intuitive graphical interface for working with existing...

including the creation of Phylogenetic trees, mosaic structure predictions

NeXplorer

free

astoltzfus, vivekgopalan

Nexplorer is a web-based phylogenetic browser, used to view and edit comparative data...

Nexplorer is a web-based phylogenetic browser ...the tips of a tree are aligned

PAUP*

David Swofford

PAUP* is a new release of the software package for inference of evolutionary trees...

inference of evolutionary trees...comprehensive introduction to phylogenetic

TreeMe

SequentiX - Digital DNA Processing

TreeMe allows visualization, editing, and annotation of large phylogenetic...

annotation of large phylogenetic trees...of several trees onto a single tree. You get

NJPLOT

free

M. Gouy

NJplot is a tree drawing program capable of drawing any phylogenetic tree expressed...

phylogenetic tree expressed in the Newick phylogenetic tree...the unrooted trees

BAMBE

free

Donald Simon & Bret Larget, Department of Mathematics and Computer Science, Duquesne University.

Bayesian Analysis in Molecular Biology and Evolution (BAMBE) is a free software package...

posterior distribution of phylogenetic trees and likelihood...the sampled trees and parameter

PoInTree - Polar and Interactive Tree

free

Nerviano Medical Sciences,GeneProject

PoInTree (Polar and Interactive Tree) is an application that allows to build, visualize and customize...

visualize and customize phylogenetic trees in a polar...flexible view. Phylogenetic tree calculation

Phylogenetic Tree

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